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ПОЛНОГЕНОМНОЕ СЕКВЕНИРОВАНИЕ И БИОИНФОРМАТИЧЕСКИЙ АНАЛИЗ ИЗОЛЯТОВ PASTEURELLA MULTOCIDA

https://doi.org/10.20914/2304-4691-2020-3-548

About the Authors

А. Амиргазин
Национальный центр биотехнологии
Russian Federation


К. Муканов
Национальный центр биотехнологии
Russian Federation


М. Куйбагаров
Национальный центр биотехнологии
Russian Federation


Т. Карибаев
Национальный центр биотехнологии
Russian Federation


Е. Раманкулов
Национальный центр биотехнологии
Russian Federation


А. Шевцов
Национальный центр биотехнологии
Russian Federation


References

1. Souvorov A., Agarwala R., Lipman D.J.SKESA: strategic k-merextension for scrupulous assemblies //Genome biology. - 2018. - Т. 19. - №. 1. - С. 153.

2. Townsend K.M. et al. Genetic organization of Pasteurella multocida cap loci and development of a multiplex capsular PCR typing system //Journal of Clinical Microbiology. - 2001. - Т. 39. - №. 3. - С. 924-929.

3. Harper M. et al. Development of a rapid multiplex PCR assay to genotype Pasteurella multocida strains by use of the lipopolysaccharide outer core biosynthesis locus //Journal of Clinical Microbiology. - 2015. - Т. 53. - №. 2. - С. 477-485.

4. Pasteurella multocida multihost multilocus sequence type (MLST) database [Электронный ресурс].URL: http://pubmlst.org/pmultocida/multihost/introduction.shtml.

5. Brettin T. et al. RAST tk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes //Scientific reports. - 2015. - Т. 5. - С. 8365.

6. Orynbayev M. et al. Biological characterization of Pasteurella multocida present in the Saiga population //BMC microbiology. - 2019. - Т. 19. - №. 1. - С. 37.


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