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МЕТОДЫ БИОИНФОРМАТИЧЕСКОГО АНАЛИЗА ВИРУСНЫХ МЕТАГЕНОМОВ КИШЕЧНИКА ЧЕЛОВЕКА

https://doi.org/10.20914/2304-4691-2019-3-580

About the Authors

Е. Старикова
ФНКЦ ФХМ ФМБА России
Russian Federation


К. Климина
ФНКЦ ФХМ ФМБА России
Russian Federation


А. Хурумова
ФНКЦ ФХМ ФМБА России
Russian Federation


Д. Ульянов
ФНКЦ ФХМ ФМБА России
Russian Federation


Е. Ильина
ФНКЦ ФХМ ФМБА России
Russian Federation


References

1. Dutilh B.E. et al. A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes //Nature communications. 2014. Т. 5. С. 4498

2. Wood D.E., Salzberg S.L. Kraken: ultrafast metagenomic sequence classification using exact alignments //Genome biology. 2014. Т. 15. №. 3. С. R46.

3. Li D. et al. MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph // Bioinformatics. 2015. Т. 31. №. 10. С. 1674-1676.

4. Nurk S. et al. mеtаSРАdеs: a new versatile metagenomic assembler //Genome research. 2017. Т. 27. №. 5. С. 824-834.

5. Grazziotin A.L., Koonin E.V., Kristensen D.M. Prokaryotic virus orthologous groups (рVОGs): a resource for comparative genomics and protein family annotation //Nucleic acids research. 2016. С. gkw975.


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