actbiotechАктуальная биотехнологияTopical biotechnology2304-4691ВГУИТ10.20914/2304-4691-2020-3-539-540actbiotech-4977Research ArticleСтатьиРЕТРОТРАНСКРИПТОМ РАСТЕНИЙ: ЗАКОНОМЕРНОСТИ ОРГАНИЗАЦИИ И МАСШТАБЫОмаровМ. Р.noemail@neicon.ruМеркуловП. Ю.noemail@neicon.ruГварамияС. А.noemail@neicon.ruКолгановаЕ. И.noemail@neicon.ruКировИ. В.noemail@neicon.ruВНИИ сельскохозяйственной биотехнологииRussian Federation20202609202003539540Copyright © Омаров М.Р., Меркулов П.Ю., Гварамия С.А., Колганова Е.И., Киров И.В., 20202020Омаров М.Р., Меркулов П.Ю., Гварамия С.А., Колганова Е.И., Киров И.В.Омаров М.Р., Меркулов П.Ю., Гварамия С.А., Колганова Е.И., Киров И.В.Данная работа распространяется под лицензией Creative Commons Attribution 4.0.This work is licensed under a Creative Commons Attribution 4.0 License.https://www.actbio-vsuet.ru/jour/article/view/4977ReferencesSlotkin K.R, Vaughn M., Borges F., Tanurdžić M., Becker J.D., Feijó J.A, Martienssen R.A. (2009) Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen. Cell. 136(3): 461-472Slotkin K.R, Vaughn M., Borges F., Tanurdžić M., Becker J.D., Feijó J.A, Martienssen R.A. (2009) Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen. Cell. 136(3): 461-472Oberlin S., et al. (2017) A genome-wide transcriptome and translatome analysis of Arabidopsis transposons identifies a unique and conserved genome expression strategy fot Ty1/Copia retroelements. Genome Res. 27: 1549-1562.Oberlin S., et al. (2017) A genome-wide transcriptome and translatome analysis of Arabidopsis transposons identifies a unique and conserved genome expression strategy fot Ty1/Copia retroelements. Genome Res. 27: 1549-1562.Guffanti G., et al. (2018) Novel Bioinformatics Approach Identifies Transcriptional Profiles of Lineage-Specific Transposable Elements at Distinct Loci in the Human Dorsolateral Prefrontal Cortex / // Molecular Biology and Evolution. - 2018. - 2435-2453 p.Guffanti G., et al. (2018) Novel Bioinformatics Approach Identifies Transcriptional Profiles of Lineage-Specific Transposable Elements at Distinct Loci in the Human Dorsolateral Prefrontal Cortex / // Molecular Biology and Evolution. - 2018. - 2435-2453 p.Shadid S., Slotkin K.R. (2020) The current revolution in transposable element biology enabled by long reads. Current Opinion in Plant Biology. 54: 49-56Shadid S., Slotkin K.R. (2020) The current revolution in transposable element biology enabled by long reads. Current Opinion in Plant Biology. 54: 49-56Steinbiss S, Willhoeft U, Gremme G, Kurtz S. (2009) Fine-grained annotation and classification of de novo predicted LTR retrotransposons. Nucleic Acids Research. 37(21): 7002-7013Steinbiss S, Willhoeft U, Gremme G, Kurtz S. (2009) Fine-grained annotation and classification of de novo predicted LTR retrotransposons. Nucleic Acids Research. 37(21): 7002-7013Ellinghaus D., Kurtz S. Willhoeft U. (2008) LTR harvest, an efficient and flexible software for de novo detection of LTR retrotransposons. BMC Bioinformatics. 9(18)Ellinghaus D., Kurtz S. Willhoeft U. (2008) LTR harvest, an efficient and flexible software for de novo detection of LTR retrotransposons. BMC Bioinformatics. 9(18)Kim D., Paggi J.M., Park C., Bennet C., Salzberg S.L. (2019) Graph-based genome alignment and genotyping withHISAT2 and HISAT-genotype. Nat Biotechnol. 37: 907-915Kim D., Paggi J.M., Park C., Bennet C., Salzberg S.L. (2019) Graph-based genome alignment and genotyping withHISAT2 and HISAT-genotype. Nat Biotechnol. 37: 907-915Kovaka, S. et al. (2019) Transcriptome assembly from long-read RNA-seq alignments with StringTie2. Genome Biol. 20 (278)Kovaka, S. et al. (2019) Transcriptome assembly from long-read RNA-seq alignments with StringTie2. Genome Biol. 20 (278)Quinlan A.R., et al.. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 26(6): 841-842Quinlan A.R., et al.. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 26(6): 841-842Li H., Handsaker B., Wysoker A., Fennell T., Ruan J., Homer N., Marth G., Abecasis G., Durbin R., (2009) The Sequence alignment/map (SAM) format and SAMtools. Bioinformatics. 25(16): 2078Li H., Handsaker B., Wysoker A., Fennell T., Ruan J., Homer N., Marth G., Abecasis G., Durbin R., (2009) The Sequence alignment/map (SAM) format and SAMtools. Bioinformatics. 25(16): 2078
The authors declare that there are no conflicts of interest present.