actbiotechАктуальная биотехнологияTopical biotechnology2304-4691ВГУИТ10.20914/2304-4691-2020-3-536-538actbiotech-4976Research ArticleСтатьиИЗУЧЕНИЕ СТРУКТУРЫ ТРАНСКРИПТОМА РАСТЕНИЙ МЕТОДОМ ПРЯМОГО СЕКВЕНИРОВАНИЯ РНК НА ПЛАТФОРМЕ OXFORDNANOPOREГлушкевичА. И.noemail@neicon.ruКнязевА. Н.noemail@neicon.ruФесенкоИ. А.noemail@neicon.ruИнститут биоорганической химии им. академиков М.М. Шемякина и Ю.А. Овчинникова РАНRussian Federation20202609202003536538Copyright © Глушкевич А.И., Князев А.Н., Фесенко И.А., 20202020Глушкевич А.И., Князев А.Н., Фесенко И.А.Глушкевич А.И., Князев А.Н., Фесенко И.А.Данная работа распространяется под лицензией Creative Commons Attribution 4.0.This work is licensed under a Creative Commons Attribution 4.0 License.https://www.actbio-vsuet.ru/jour/article/view/4976ReferencesGoodstein D.M. [и др.]. Phytozome: a comparative platform for green plant genomics // Nucleic Acids Research. 2012. № D1 (40). C. D1178 D1186.Goodstein D.M. [и др.]. Phytozome: a comparative platform for green plant genomics // Nucleic Acids Research. 2012. № D1 (40). C. D1178 D1186.Lang D. [и др.]. The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution // The Plant Journal. 2018. № 3 (93). C. 515-533.Lang D. [и др.]. The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution // The Plant Journal. 2018. № 3 (93). C. 515-533.Leger A. [и др.]. Genomics. RNA modifications detection by comparative Nanopore direct RNA sequencing. 2019.Leger A. [и др.]. Genomics. RNA modifications detection by comparative Nanopore direct RNA sequencing. 2019.Li H. [и др.]. The Sequence Alignment/Map format and SAMtools // Bioinformatics. 2009. № 16 (25). C. 2078-2079.Li H. [и др.]. The Sequence Alignment/Map format and SAMtools // Bioinformatics. 2009. № 16 (25). C. 2078-2079.Li H. Minimap2: pairwise alignment for nucleotide sequences // Bioinformatics. 2018. № 18 (34). C. 3094-3100.Li H. Minimap2: pairwise alignment for nucleotide sequences // Bioinformatics. 2018. № 18 (34). C. 3094-3100.Liao Y., Smyth G.K., Shi W. feature Counts: an efficient general purpose program for assigning sequence reads to genomic features // Bioinformatics. 2014. № 7 (30). C. 923-930.Liao Y., Smyth G.K., Shi W. feature Counts: an efficient general purpose program for assigning sequence reads to genomic features // Bioinformatics. 2014. № 7 (30). C. 923-930.Love M.I., Huber W., Anders S. Moderated estimation of fold change and dispersion for RNA-seq data withDESeq2 // Genome Biology. 2014. № 12 (15). C. 550.Love M.I., Huber W., Anders S. Moderated estimation of fold change and dispersion for RNA-seq data withDESeq2 // Genome Biology. 2014. № 12 (15). C. 550.Parker M.T. [и др.]. Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification // eLife. 2020. (9). C. e49658.Parker M.T. [и др.]. Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification // eLife. 2020. (9). C. e49658.Robinson J.T. [и др.]. Integrative genomics viewer // Nature Biotechnology. 2011. № 1 (29). C. 24-26.Robinson J.T. [и др.]. Integrative genomics viewer // Nature Biotechnology. 2011. № 1 (29). C. 24-26.Quinlan A.R., Hall I.M. BED Tools: a flexible suite of utilities for comparing genomic features // Bioinformatics. 2010. № 6 (26). C. 841-842.Quinlan A.R., Hall I.M. BED Tools: a flexible suite of utilities for comparing genomic features // Bioinformatics. 2010. № 6 (26). C. 841-842.Tang A.D. [и др.]. Full-length transcript characterization ofSF3B1 mutation in chronic lymphocytic leukemia reveals downregulation of retained introns // Nature Communications. 2020. № 1 (11). C. 1438.Tang A.D. [и др.]. Full-length transcript characterization ofSF3B1 mutation in chronic lymphocytic leukemia reveals downregulation of retained introns // Nature Communications. 2020. № 1 (11). C. 1438.Zhang S. [и др.]. New insights into Arabidopsis transcriptome complexity revealed by direct sequencing of native RNAs // Nucleic Acids Research. 2020. C. gkaa588.Zhang S. [и др.]. New insights into Arabidopsis transcriptome complexity revealed by direct sequencing of native RNAs // Nucleic Acids Research. 2020. C. gkaa588.
The authors declare that there are no conflicts of interest present.